| 1 |
nino.borges |
742 |
===== LCHC req from Dana to take an XLS of dob and other pii data and pivot by deduplicated user name =====
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>>> docIDMatrix = {}
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>>> mrnMatrix = {}
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>>> ccaidMatrix = {}
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>>> dobMatrix = {}
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>>> ssnMatrix = {}
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>>> otherIDMatrix = {}
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>>> otherPIIMatrix = {}
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>>> contents = open(r"C:\Temp\LCHC - Consolidated Master_For Scripting_02.17.21.csv").readlines()
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>>> contents[0]
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'Doc ID:|MRN|CCAID|DOB|Name|SSN|Other Identifiable Info.|Other PII|Multiple Doc IDs (Used for Consolidation Only)\n'
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>>> contents = contents[1:]
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>>> for line in contents:
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... line = line.replace("\n","")
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... line = line.split("|")
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... name = line[4]
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... name = name.upper()
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... name = name.lstrip()
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... name = name.rstrip()
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... if name in docIDMatrix.keys():
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... if line[0] in docIDMatrix[name]:
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... pass
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... else:
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... docIDMatrix[name].append(line[0])
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... else:
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... docIDMatrix[name] = [line[0],]
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...
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>>> len(docIDMatrix.keys())
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66183
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>>> docIDMatrix['ABAD HIRALDO, PASCUAL']
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['REV00118844', 'REV00215151']
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>>> for line in contents:
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... line = line.replace("\n","")
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... line = line.split("|")
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... name = line[4]
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... name = name.upper()
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... name = name.lstrip()
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... name = name.rstrip()
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... if line[1]:
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... if name in mrnMatrix.keys():
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... if line[1] in mrnMatrix[name]:
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... pass
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... else:
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... mrnMatrix[name].append(line[1])
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... else:
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... mrnMatrix[name] = [line[1],]
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...
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>>> len(mrnMatrix.keys())
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3534
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>>> for line in contents:
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... line = line.replace("\n","")
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... line = line.split("|")
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... name = line[4]
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... name = name.upper()
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... name = name.lstrip()
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... name = name.rstrip()
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... if line[2]:
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... if name in ccaidMatrix.keys():
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... if line[2] in ccaidMatrix[name]:
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... pass
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... else:
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... ccaidMatrix[name].append(line[2])
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... else:
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... ccaidMatrix[name] = [line[2],]
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...
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>>> len(ccaidMatrix.keys())
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3
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>>> for line in contents:
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... line = line.replace("\n","")
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... line = line.split("|")
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... name = line[4]
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... name = name.upper()
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... name = name.lstrip()
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... name = name.rstrip()
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... if line[5]:
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... if name in ssnMatrix.keys():
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... if line[5] in ssnMatrix[name]:
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... pass
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... else:
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... ssnMatrix[name].append(line[5])
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... else:
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... ssnMatrix[name] = [line[5],]
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...
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>>> len(ssnMatrix.keys())
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521
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>>> for line in contents:
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... line = line.replace("\n","")
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... line = line.split("|")
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... name = line[4]
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... name = name.upper()
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... name = name.lstrip()
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... name = name.rstrip()
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... if line[6]:
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... if name in otherIDMatrix.keys():
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... if line[6] in otherIDMatrix[name]:
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... pass
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... else:
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... otherIDMatrix[name].append(line[6])
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... else:
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... otherIDMatrix[name] = [line[6],]
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...
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>>> len(otherIDMatrix.keys())
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24636
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>>> for line in contents:
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... line = line.replace("\n","")
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... line = line.split("|")
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... name = line[4]
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... name = name.upper()
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... name = name.lstrip()
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... name = name.rstrip()
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... if line[7]:
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... if name in otherPIIMatrix.keys():
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... if line[7] in otherPIIMatrix[name]:
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... pass
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... else:
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... otherPIIMatrix[name].append(line[7])
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... else:
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... otherPIIMatrix[name] = [line[7],]
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...
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>>> len(otherPIIMatrix.keys())
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1351
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>>> effFile = open(r"C:\Temp\LCHC - dobTestLog.txt",'w')
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>>> for line in contents:
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... line = line.replace("\n","")
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... line = line.split("|")
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... name = line[4]
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... name = name.upper()
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... name = name.lstrip()
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... name = name.rstrip()
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... rawDob = line[3]
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... if len(line[3]) >5:
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... if "/" in rawDob:
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... rawDob = datetime.datetime.strptime(rawDob, '%m/%d/%Y')
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... dob = rawDob.strftime("%m/%d/%Y")
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... else:
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... rawDob = datetime.datetime.strptime(rawDob, '%Y%m%d')
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... dob = rawDob.strftime("%m/%d/%Y")
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... effFile.write("%s changed to %s for docID %s\n"% (line[3], dob, line[0]))
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... if name in dobMatrix.keys():
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... if dob in dobMatrix[name]:
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... pass
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... else:
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... dobMatrix[name].append(dob)
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... else:
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... dobMatrix[name] = [dob,]
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... else:
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... if line[3]:
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... effFile.write("ERROR: %s is too small to parse!!!\n"% line[3])
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...
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>>> effFile.close()
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>>> len(dobMatrix.keys())
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64145
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>>> patientList = docIDMatrix.keys()
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>>> patientList.sort()
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>>> patientList[0]
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''
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>>> patientList[1]
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'A., A.'
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>>> patientList[2]
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'A., JESSE'
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>>> patientList[3]
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'A., JOHN'
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=== Now we write it out ===
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>>> dobPatientList = dobMatrix.keys()
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>>> mrnPatientList = mrnMatrix.keys()
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>>> ccaidPatientList = ccaidMatrix.keys()
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>>> ssnPatientList = ssnMatrix.keys()
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>>> otherIDPatientList = otherIDMatrix.keys()
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>>> otherPIIPatientList = otherPIIMatrix.keys()
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>>> outputFile = open(r"C:\Temp\LCHC - Consolidated Master_For Scripting_02.17.21-OUTPUT.DAT",'w')
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>>> outputFile.write("Name|DOB|MRN|CCAID|SSN|OtherIDInfo|OtherPII|DodIDs\n")
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>>> for pt in patientList:
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... dob = ""
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... docID = ""
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... mrn = ""
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... ccaid = ""
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... ssn = ""
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... otherID = ""
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... otherPII = ""
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... outputFile.write("%s|"%pt)
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... if pt in dobPatientList:
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... dobs = dobMatrix[pt]
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... if len(dobs) > 1:
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... for d in dobs:
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... dob = dob + d + ";"
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... else:
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... dob = dobs[0]
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... outputFile.write("%s|"%dob)
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... if pt in mrnPatientList:
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... mrns = mrnMatrix[pt]
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... if len(mrns) >1:
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... for m in mrns:
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... mrn = mrn + m + ";"
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... else:
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... mrn = mrns[0]
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... outputFile.write("%s|"%mrn)
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... if pt in ccaidPatientList:
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... ccaids = ccaidMatrix[pt]
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... if len(ccaids) >1:
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... for c in ccaids:
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... ccaid = ccaid + c + ";"
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... else:
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... ccaid = ccaids[0]
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... outputFile.write("%s|"%ccaid)
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... if pt in ssnPatientList:
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... ssns = ssnMatrix[pt]
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... if len(ssns) >1:
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... for s in ssns:
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... ssn = ssn + s + ";"
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... else:
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... ssn = ssns[0]
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... outputFile.write("%s|"%ssn)
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... if pt in otherIDPatientList:
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... otherIDs = otherIDMatrix[pt]
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... if len(otherIDs) >1:
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... for i in otherIDs:
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... otherID = otherID + i + ";"
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... else:
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... otherID = otherIDs[0]
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... outputFile.write("%s|"%otherID)
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... if pt in otherPIIPatientList:
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... otherPIIs = otherPIIMatrix[pt]
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... if len(otherPIIs) >1:
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... for p in otherPIIs:
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... otherPII = otherPII + p + ";"
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... else:
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... otherPII = otherPIIs[0]
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... outputFile.write("%s|"%otherPII)
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... docIDs = docIDMatrix[pt]
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... if len(docIDs) >1:
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... for rev in docIDs:
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... docID = docID + rev + ";"
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... else:
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... docID = docIDs[0]
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... outputFile.write("%s\n"%docID)
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...
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>>> outputFile.close()
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====== OLD BELOW THIS LINE, DO NOT USE ======
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PythonWin 2.7.17 (v2.7.17:c2f86d86e6, Oct 19 2019, 20:49:36) [MSC v.1500 32 bit (Intel)] on win32.
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Portions Copyright 1994-2018 Mark Hammond - see 'Help/About PythonWin' for further copyright information.
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>>> docIDMatrix = {}
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| 253 |
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>>> mrnMatrix = {}
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| 254 |
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>>> ccaidMatrix = {}
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| 255 |
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>>> dobMatrix = {}
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| 256 |
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>>> ssnMatrix = {}
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| 257 |
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>>> otherIDMatrix = {}
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| 258 |
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>>> otherPIIMatrix = {}
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| 259 |
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>>> contents = open(r"C:\Temp\LCHC - Consolidated Master_For Scripting_02.17.21.csv").readlines()
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| 260 |
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>>> contents[0]
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| 261 |
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'Doc ID:|MRN|CCAID|DOB|Name|SSN|Other Identifiable Info.|Other PII|Multiple Doc IDs (Used for Consolidation Only)\n'
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| 262 |
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>>> contents = contents[1:]
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| 263 |
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>>> import datetime
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| 264 |
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>>> test = '20210122'
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| 265 |
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>>> test2 = datetime.datetime.strptime(test, '%Y%m%d")
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| 266 |
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>>> test = '20210122'
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| 267 |
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>>> test2 = datetime.datetime.strptime(test, '%Y%m%d')
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| 268 |
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>>> test2.strftime("%m/%d/%Y")
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| 269 |
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'01/22/2021'
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| 270 |
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>>> for line in contents:
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| 271 |
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... line = line.replace("\n","")
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| 272 |
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... line = line.split("|")
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| 273 |
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... name = line[4]
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| 274 |
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... name = name.upper()
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| 275 |
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... if name in docIDMatrix.keys():
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| 276 |
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... if line[0] in docIDMatrix[name]:
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| 277 |
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... pass
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| 278 |
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... else:
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| 279 |
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... docIDMatrix[name].append(line[0])
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| 280 |
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... else:
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| 281 |
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... docIDMatrix[name] = [line[0],]
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| 282 |
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...
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| 283 |
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>>> len(docIDMatrix.keys()
|
| 284 |
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... )
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| 285 |
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66433
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| 286 |
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| 287 |
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>>> len(docIDMatrix['ABAD HIRALDO, PASCUAL'])
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| 288 |
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2
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| 289 |
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>>> docIDMatrix['ABAD HIRALDO, PASCUAL']
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| 290 |
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['REV00118844', 'REV00215151']
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| 291 |
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| 292 |
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>>> for line in contents:
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| 293 |
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... line = line.replace("\n","")
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| 294 |
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... line = line.split("|")
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| 295 |
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... name = line[4]
|
| 296 |
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... name = name.upper()
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| 297 |
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... if line[1]:
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| 298 |
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... if name in mrnMatrix.keys():
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| 299 |
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... if line[1] in mrnMatrix[name]:
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| 300 |
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... pass
|
| 301 |
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... else:
|
| 302 |
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... mrnMatrix[name].append(line[1])
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| 303 |
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... else:
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| 304 |
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... mrnMatrix[name] = [line[1],]
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| 305 |
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...
|
| 306 |
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>>> len(mrnMatrix.keys())
|
| 307 |
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3535
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| 308 |
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>>> for line in contents:
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| 309 |
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... line = line.replace("\n","")
|
| 310 |
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... line = line.split("|")
|
| 311 |
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... name = line[4]
|
| 312 |
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... name = name.upper()
|
| 313 |
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... if line[2]:
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| 314 |
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... if name in ccaidMatrix.keys():
|
| 315 |
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... if line[2] in ccaidMatrix[name]:
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| 316 |
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... pass
|
| 317 |
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... else:
|
| 318 |
|
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... ccaidMatrix[name].append(line[2])
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| 319 |
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... else:
|
| 320 |
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... ccaidMatrix[name] = [line[2],]
|
| 321 |
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...
|
| 322 |
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>>> len(ccaidMatrix.keys())
|
| 323 |
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3
|
| 324 |
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>>> for line in contents:
|
| 325 |
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... line = line.replace("\n","")
|
| 326 |
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... line = line.split("|")
|
| 327 |
|
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... name = line[4]
|
| 328 |
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... name = name.upper()
|
| 329 |
|
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... if line[5]:
|
| 330 |
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... if name in ssnMatrix.keys():
|
| 331 |
|
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... if line[5] in ssnMatrix[name]:
|
| 332 |
|
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... pass
|
| 333 |
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... else:
|
| 334 |
|
|
... ssnMatrix[name].append(line[5])
|
| 335 |
|
|
... else:
|
| 336 |
|
|
... ssnMatrix[name] = [line[5],]
|
| 337 |
|
|
...
|
| 338 |
|
|
>>> len(ssnMatrix.keys())
|
| 339 |
|
|
522
|
| 340 |
|
|
>>> for line in contents:
|
| 341 |
|
|
... line = line.replace("\n","")
|
| 342 |
|
|
... line = line.split("|")
|
| 343 |
|
|
... name = line[4]
|
| 344 |
|
|
... name = name.upper()
|
| 345 |
|
|
... if line[6]:
|
| 346 |
|
|
... if name in otherIDMatrix.keys():
|
| 347 |
|
|
... if line[6] in otherIDMatrix[name]:
|
| 348 |
|
|
... pass
|
| 349 |
|
|
... else:
|
| 350 |
|
|
... otherIDMatrix[name].append(line[6])
|
| 351 |
|
|
... else:
|
| 352 |
|
|
... otherIDMatrix[name] = [line[6],]
|
| 353 |
|
|
...
|
| 354 |
|
|
>>> len(otherIDMatrix.keys())
|
| 355 |
|
|
24639
|
| 356 |
|
|
>>> for line in contents:
|
| 357 |
|
|
... line = line.replace("\n","")
|
| 358 |
|
|
... line = line.split("|")
|
| 359 |
|
|
... name = line[4]
|
| 360 |
|
|
... name = name.upper()
|
| 361 |
|
|
... if line[7]:
|
| 362 |
|
|
... if name in otherPIIMatrix.keys():
|
| 363 |
|
|
... if line[7] in otherPIIMatrix[name]:
|
| 364 |
|
|
... pass
|
| 365 |
|
|
... else:
|
| 366 |
|
|
... otherPIIMatrix[name].append(line[7])
|
| 367 |
|
|
... else:
|
| 368 |
|
|
... otherPIIMatrix[name] = [line[7],]
|
| 369 |
|
|
...
|
| 370 |
|
|
>>> len(otherPIIMatrix.keys())
|
| 371 |
|
|
1352
|
| 372 |
|
|
>>> test = '7/15/1974'
|
| 373 |
|
|
>>> test2 = datetime.datetime.strptime(test, '%m/%d/%Y')
|
| 374 |
|
|
>>> test2.strftime("%m/%d/%Y")
|
| 375 |
|
|
'07/15/1974'
|
| 376 |
|
|
>>> for line in contents:
|
| 377 |
|
|
... line = line.replace("\n","")
|
| 378 |
|
|
... line = line.split("|")
|
| 379 |
|
|
... name = line[4]
|
| 380 |
|
|
... name = name.upper()
|
| 381 |
|
|
... if line[3]:
|
| 382 |
|
|
... if name in dobMatrix.keys():
|
| 383 |
|
|
... if line[3] in dobMatrix[name]:
|
| 384 |
|
|
... pass
|
| 385 |
|
|
... else:
|
| 386 |
|
|
... dobMatrix[name].append(line[3])
|
| 387 |
|
|
... else:
|
| 388 |
|
|
... dobMatrix[name] = [line[3],]
|
| 389 |
|
|
|
| 390 |
|
|
>>> for line in contents:
|
| 391 |
|
|
... line = line.replace("\n","")
|
| 392 |
|
|
... line = line.split("|")
|
| 393 |
|
|
... name = line[4]
|
| 394 |
|
|
... name = name.upper()
|
| 395 |
|
|
... if line[3]:
|
| 396 |
|
|
... if "/" in rawDob:
|
| 397 |
|
|
... rawDob = datetime.datetime.strptime(rawDob, '%m/%d/%Y')
|
| 398 |
|
|
... dob = rawDob.strftime("%m/%d/%Y")
|
| 399 |
|
|
... else:
|
| 400 |
|
|
... rawDob = datetime.datetime.strptime(rawDob, '%Y%m%d')
|
| 401 |
|
|
... dob = rawDob.strftime("%m/%d/%Y")
|
| 402 |
|
|
... if name in dobMatrix.keys():
|
| 403 |
|
|
... if dob in dobMatrix[name]:
|
| 404 |
|
|
... pass
|
| 405 |
|
|
... else:
|
| 406 |
|
|
... dobMatrix[name].append(dob)
|
| 407 |
|
|
... else:
|
| 408 |
|
|
... dobMatrix[name] = [dob,]
|
| 409 |
|
|
...
|
| 410 |
|
|
>>> effFile = open(r"C:\Temp\LCHC - dobTestLog.txt",'w')
|
| 411 |
|
|
|
| 412 |
|
|
|
| 413 |
|
|
>>> dobMatrix = {}
|
| 414 |
|
|
>>> effFile = open(r"C:\Temp\LCHC - dobTestLog.txt",'w')
|
| 415 |
|
|
>>> for line in contents:
|
| 416 |
|
|
... line = line.replace("\n","")
|
| 417 |
|
|
... line = line.split("|")
|
| 418 |
|
|
... name = line[4]
|
| 419 |
|
|
... name = name.upper()
|
| 420 |
|
|
... rawDob = line[3]
|
| 421 |
|
|
... if len(line[3]) >5:
|
| 422 |
|
|
... if "/" in rawDob:
|
| 423 |
|
|
... rawDob = datetime.datetime.strptime(rawDob, '%m/%d/%Y')
|
| 424 |
|
|
... dob = rawDob.strftime("%m/%d/%Y")
|
| 425 |
|
|
... else:
|
| 426 |
|
|
... rawDob = datetime.datetime.strptime(rawDob, '%Y%m%d')
|
| 427 |
|
|
... dob = rawDob.strftime("%m/%d/%Y")
|
| 428 |
|
|
... effFile.write("%s changed to %s for docID %s\n"% (line[3], dob, line[0]))
|
| 429 |
|
|
... if name in dobMatrix.keys():
|
| 430 |
|
|
... if dob in dobMatrix[name]:
|
| 431 |
|
|
... pass
|
| 432 |
|
|
... else:
|
| 433 |
|
|
... dobMatrix[name].append(dob)
|
| 434 |
|
|
... else:
|
| 435 |
|
|
... dobMatrix[name] = [dob,]
|
| 436 |
|
|
... else:
|
| 437 |
|
|
... if line[3]:
|
| 438 |
|
|
... effFile.write("ERROR: %s is too small to parse!!!\n"% line[3])
|
| 439 |
|
|
...
|
| 440 |
|
|
>>> effFile.close()
|
| 441 |
|
|
>>> len(dobMatrix.keys())
|
| 442 |
|
|
64385
|
| 443 |
|
|
>>> outputFile = open(r"C:\Temp\LCHC - Consolidated Master_For Scripting_02.17.21-OUTPUT.DAT",'w')
|
| 444 |
|
|
>>> patientList = docIDMatrix.keys()
|
| 445 |
|
|
>>> patientList.sort()
|
| 446 |
|
|
>>> patientList[0]
|
| 447 |
|
|
''
|
| 448 |
|
|
>>> patientList[1]
|
| 449 |
|
|
' CAMPUZANO, JACGP'
|
| 450 |
|
|
>>> patientList[2]
|
| 451 |
|
|
' LEVESQUE, JENNIFER'
|
| 452 |
|
|
>>> patientList[3]
|
| 453 |
|
|
' OLIVER, CRUZ'
|
| 454 |
|
|
>>> patientList[1].lstrip()
|
| 455 |
|
|
'CAMPUZANO, JACGP'
|
| 456 |
|
|
>>> patientList[1].rstrip()
|
| 457 |
|
|
' CAMPUZANO, JACGP'
|
| 458 |
|
|
>>> |
